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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
695
ChIP-seq
561
total RNA-seq
214
ATAC-seq
149
DNase-seq
87
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
21
pCHi-C
13
Hi-C
13
WGBS
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
695
DNA binding
661
Transcription
395
DNA accessibility
23
DNA methylation
13
3D chromatin structure
Target of assay
491
histone modification
490
histone
268
narrow histone mark
222
broad histone mark
147
control
59
transcription factor
12
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
230
October, 2019
217
August, 2017
193
May, 2020
136
August, 2021
135
June, 2019
120
July, 2018
101
February, 2021
94
May, 2019
82
November, 2017
66
May, 2022
58
February, 2023
51
October, 2018
48
December, 2017
47
July, 2019
47
September, 2023
39
November, 2019
38
May, 2021
32
March, 2020
25
November, 2018
23
April, 2019
20
February, 2020
19
April, 2020
18
October, 2017
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1263
bam
1120
bigWig
793
bed narrowPeak
508
tsv
460
bigBed narrowPeak
320
fastq
225
tagAlign
181
bed broadPeak
162
bed bed3+
157
txt
147
bigBed broadPeak
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1893
Homo sapiens
Biosample type
1901
tissue
1003
primary cell
583
cell line
296
in vitro differentiated cells
9
stem cell
Organ
connective tissue
495
pancreas
476
adipose tissue
361
liver
heart
299
kidney
261
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1804
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1174
GRCh38
1146
hg19
Lab
1589
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
connective tissue
heart
pituitary gland
BIOSAMPLE
ASSAY
1901 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
60
292
67
1
6
7
4
3
1
1
4
liver
145
167
20
2
1
1
1
3
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
body of pancreas
35
3
4
4
2
2
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