Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
Assay category
98
DNA accessibility
80
DNA binding
60
Transcription
41
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
705
February, 2021
318
November, 2017
307
May, 2021
293
August, 2021
291
May, 2020
268
August, 2017
257
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
78
December, 2017
76
November, 2018
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
October, 2017
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
103
bam
103
bed narrowPeak
85
bigWig
64
bigBed narrowPeak
24
fastq
7
txt
bed bed3+
Organism
279
Homo sapiens
Biosample type
145
tissue
134
primary cell
Organ
104
pancreas
80
epithelium
57
heart
40
liver
23
kidney
1
musculature of body
Project
145
AMP
134
HPAP
Genome assembly (visualization)
103
hg19
64
GRCh38
Lab
134
Klaus Kaestner, Upenn
81
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
tagAlign
BIOSAMPLE
ASSAY
279 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
heart left ventricle
35
islet of Langerhans
18
6
kidney
23
heart right ventricle
13
+ See 2 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
See all biosamples
Download