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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
53
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
53
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
25
histone
25
histone modification
23
control
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
37
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
430
bam
413
bigWig
401
tsv
32
fastq
13
bed narrowPeak
10
bigBed narrowPeak
tagAlign
3
bed broadPeak
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
468
Homo sapiens
Biosample type
466
tissue
2
primary cell
1
in vitro differentiated cells
Organ
854
pancreas
682
liver
622
connective tissue
478
epithelium
469
adipose tissue
357
heart
276
kidney
217
vasculature
213
blood vessel
159
bone element
133
brain
131
artery
86
limb
69
blood
69
bodily fluid
57
eye
47
musculature of body
41
nerve
33
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
469
AMP
Genome assembly (visualization)
411
hg19
410
GRCh38
Lab
469
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
tagAlign
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
469 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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