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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
74
total RNA-seq
40
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
88
Transcription
82
DNA accessibility
40
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
12
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
647
February, 2021
396
November, 2017
394
May, 2021
353
August, 2017
341
May, 2020
298
October, 2019
222
August, 2021
199
May, 2022
168
July, 2018
165
February, 2023
99
May, 2019
79
July, 2019
78
December, 2017
76
November, 2018
76
October, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
41
September, 2018
39
February, 2018
35
December, 2018
30
January, 2019
26
June, 2019
23
April, 2019
22
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
31
tsv
24
tagAlign
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
221
Homo sapiens
Biosample type
137
tissue
44
cell line
40
in vitro differentiated cells
1
primary cell
Organ
130
kidney
heart
32
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
222
AMP
Genome assembly (visualization)
102
GRCh38
55
hg19
Lab
128
Katalin Susztak, Upenn
56
AMP-T2D consortium
36
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
month_released!
November, 2020
organ_slims!
heart
BIOSAMPLE
ASSAY
222 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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