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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
49
single cell RNA-seq
1
Hi-C
Assay category
360
DNA binding
49
Transcription
1
3D chromatin structure
Target of assay
216
transcription factor
75
control
66
recombinant protein
64
histone
64
histone modification
40
broad histone mark
30
RNA binding protein
24
narrow histone mark
9
chromatin remodeller
1
other context
1
other post-translational modification
Date released
715
February, 2021
399
May, 2021
341
May, 2020
331
August, 2017
326
November, 2017
319
August, 2021
305
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
80
April, 2019
76
November, 2018
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
April, 2020
17
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
465
bam
403
bigWig
393
fastq
333
bed narrowPeak
332
bigBed narrowPeak
78
tagAlign
bed broadPeak
64
bigBed broadPeak
49
tsv
3
tar
Organism
410
Homo sapiens
Biosample type
275
cell line
89
tissue
46
primary cell
Organ
248
liver
79
brain
39
pancreas
35
epithelium
27
blood
27
bodily fluid
7
spleen
2
connective tissue
2
vasculature
1
blood vessel
Project
410
AMP
Genome assembly (visualization)
301
GRCh38
280
hg19
Lab
410
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
410 results
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Clear Filters
ChIP-seq
single cell RNA-seq
Hi-C
cell line
HepG2
247
1
GM12878
27
tissue
layer of hippocampus
22
caudate nucleus
14
substantia nigra
14
cingulate gyrus
12
middle frontal area 46
12
+ See 3 more…
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 8 more…
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