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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
Assay category
30
DNA binding
Target of assay
963
histone modification
962
histone
485
narrow histone mark
479
transcription factor
476
broad histone mark
343
control
111
RNA binding protein
88
recombinant protein
30
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
11
November, 2017
6
January, 2019
5
November, 2018
3
August, 2017
3
December, 2017
2
December, 2018
Available data
30
bam
30
bed narrowPeak
30
bigWig
30
fastq
28
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
30
Homo sapiens
Biosample type
24
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
17
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
30
AMP
Genome assembly (visualization)
30
GRCh38
30
hg19
Lab
30
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bedpe
month_released!
May, 2023
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
cell line
HepG2
14
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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