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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
186
DNA binding
37
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
183
histone
183
histone modification
116
narrow histone mark
67
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
15
July, 2019
12
February, 2020
9
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
213
bigWig
210
bam
200
bed narrowPeak
124
bigBed narrowPeak
95
tagAlign
45
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
251
Homo sapiens
Biosample type
236
tissue
15
primary cell
Organ
832
pancreas
668
liver
631
connective tissue
468
epithelium
454
adipose tissue
370
heart
342
kidney
251
brain
212
vasculature
207
blood vessel
159
bone element
132
artery
105
limb
88
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
29
embryo
20
lung
19
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
251
AMP
Genome assembly (visualization)
211
GRCh38
155
hg19
Lab
251
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bedpe bed3+
target.investigated_as!
control
BIOSAMPLE
ASSAY
251 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
13
14
1
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
temporal lobe
13
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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