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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
Assay category
27
DNA binding
Target of assay
histone modification
575
histone
343
control
338
narrow histone mark
236
broad histone mark
85
transcription factor
20
RNA binding protein
7
recombinant protein
5
nucleotide modification
2
chromatin remodeller
Date released
7
October, 2019
5
August, 2017
5
May, 2021
5
May, 2024
2
November, 2017
1
April, 2019
1
August, 2021
1
November, 2019
Available data
191
bed narrowPeak
191
bigWig
188
bam
bigBed narrowPeak
167
fastq
9
bed broadPeak
9
bigBed broadPeak
1
bed bed3+
1
tar
Organism
27
Homo sapiens
Biosample type
11
cell line
9
in vitro differentiated cells
7
tissue
Organ
8
kidney
5
heart
4
connective tissue
3
liver
2
pancreas
1
epithelium
Project
27
AMP
Genome assembly (visualization)
18
GRCh38
14
hg19
Lab
16
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bigBed narrowPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
cell line
HepG2
3
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
tissue
left cardiac atrium
5
islet of Langerhans
1
kidney
1
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