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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
53
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
1
RRBS
Assay category
402
Transcription
53
DNA binding
8
DNA accessibility
7
DNA methylation
Target of assay
25
histone
25
histone modification
23
control
16
broad histone mark
9
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
37
August, 2017
23
October, 2018
14
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
431
bam
414
bigWig
402
tsv
32
fastq
13
bed narrowPeak
10
bigBed narrowPeak
tagAlign
3
bed bedMethyl
3
bed broadPeak
3
bigBed bedMethyl
2
bed bed3+
2
bigBed broadPeak
1
bedpe bed3+
Organism
472
Homo sapiens
Biosample type
469
tissue
3
primary cell
1
in vitro differentiated cells
Organ
863
pancreas
692
liver
645
connective tissue
490
epithelium
471
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
473
AMP
Genome assembly (visualization)
415
hg19
413
GRCh38
Lab
473
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
473 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
visceral abdominal adipose tissue
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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