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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
19
DNase-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
20
DNA accessibility
20
DNA binding
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
18
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
1
March, 2020
1
October, 2017
Available data
42
bam
34
bigWig
32
bed narrowPeak
31
bigBed narrowPeak
24
fastq
19
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
43
Homo sapiens
Biosample type
43
tissue
Organ
873
pancreas
692
liver
645
connective tissue
496
epithelium
471
adipose tissue
387
heart
354
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
34
GRCh38
32
hg19
Lab
43
AMP-T2D consortium
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
month_released!
February, 2018
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
DNase-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
20
1
2
1
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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