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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
ChIP-seq
10
MeRIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
396
DNA binding
2
DNA accessibility
Target of assay
235
transcription factor
87
histone
87
histone modification
76
control
66
recombinant protein
50
broad histone mark
37
narrow histone mark
35
RNA binding protein
11
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
396
November, 2017
298
October, 2019
283
August, 2017
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
93
December, 2017
85
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
19
April, 2020
19
March, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
September, 2018
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
388
bam
329
bigWig
314
fastq
305
bed narrowPeak
303
bigBed narrowPeak
78
tagAlign
71
bed broadPeak
65
bigBed broadPeak
tsv
3
tar
1
bed bed3+
Organism
408
Homo sapiens
Biosample type
311
cell line
86
tissue
11
primary cell
Organ
305
liver
91
brain
12
epithelium
10
pancreas
6
vasculature
3
blood vessel
2
connective tissue
Project
408
AMP
Genome assembly (visualization)
279
GRCh38
273
hg19
Lab
398
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
18
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tsv
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
408 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
305
EndoC_BH1
6
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
osteoblast
1
1
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