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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
107
DNA binding
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
47
April, 2019
40
May, 2024
31
June, 2019
22
July, 2019
12
May, 2019
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
160
bigWig
138
bed narrowPeak
119
bam
113
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
265
Homo sapiens
Biosample type
255
tissue
9
primary cell
1
in vitro differentiated cells
Organ
759
pancreas
670
liver
632
connective tissue
455
adipose tissue
393
epithelium
373
heart
342
kidney
251
brain
214
vasculature
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
29
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
265
AMP
Genome assembly (visualization)
159
GRCh38
116
hg19
Lab
225
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
zippedFastqFolder
organ_slims!
blood vessel
target.investigated_as!
control
BIOSAMPLE
ASSAY
265 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
29
18
3
3
4
2
1
1
1
left cardiac atrium
40
18
1
heart
12
1
18
4
1
1
1
heart right ventricle
11
17
1
1
2
1
1
right cardiac atrium
5
18
1
1
+ See 9 more…
primary cell
cardiac fibroblast
3
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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