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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
84
ChIP-seq
18
ATAC-seq
Assay category
102
Transcription
84
DNA binding
18
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
24
May, 2022
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
204
Homo sapiens
Biosample type
180
primary cell
24
tissue
Organ
24
pancreas
Project
180
T1D
24
AMP
Genome assembly (visualization)
198
hg19
180
GRCh38
Lab
3082
AMP-T2D consortium
204
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bedMethyl
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
204 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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tissue
islet of Langerhans
6
18
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