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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
90
ChIP-seq
38
DNase-seq
11
ATAC-seq
3
WGBS
3
small RNA-seq
Assay category
402
Transcription
90
DNA binding
49
DNA accessibility
3
DNA methylation
Target of assay
49
histone
49
histone modification
36
control
34
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
392
February, 2021
68
October, 2019
33
June, 2019
23
October, 2018
13
July, 2019
7
May, 2019
5
August, 2017
1
November, 2018
1
November, 2019
1
October, 2017
Available data
544
bam
504
bigWig
408
tsv
105
bed narrowPeak
94
bigBed narrowPeak
39
bed broadPeak
38
bed bed3+
38
bigBed broadPeak
32
fastq
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
0
bed bed3
Organism
544
Homo sapiens
Biosample type
542
tissue
2
primary cell
Organ
668
liver
635
pancreas
581
connective tissue
430
adipose tissue
296
epithelium
241
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
70
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
35
embryo
24
spleen
20
vein
18
ureter
12
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
544
AMP
Genome assembly (visualization)
507
GRCh38
505
hg19
Lab
544
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
544 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
2
2
tibial nerve
4
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
subcutaneous adipose tissue
6
12
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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