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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
40
DNase-seq
8
ATAC-seq
4
total RNA-seq
1
WGBS
Assay category
68
DNA binding
48
DNA accessibility
4
Transcription
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
18
control
15
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
68
October, 2019
39
June, 2019
7
May, 2019
6
February, 2021
1
July, 2019
Available data
125
bed narrowPeak
121
bam
97
bigWig
90
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
0
bed bed3
Organism
121
Homo sapiens
Biosample type
117
tissue
4
primary cell
Organ
668
liver
635
pancreas
581
connective tissue
430
adipose tissue
296
epithelium
241
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
70
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
35
embryo
24
spleen
20
vein
18
ureter
12
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
121
AMP
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
121
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
tissue
tibial nerve
35
2
1
4
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
retina
3
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primary cell
retinal pigment epithelial cell
3
1
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