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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
11
ChIP-seq
9
ATAC-seq
2
DNase-seq
Assay category
54
Transcription
11
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
5
May, 2019
3
July, 2019
2
June, 2019
Available data
76
bam
64
bigWig
57
tsv
53
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
76
Homo sapiens
Biosample type
66
cell line
8
tissue
2
primary cell
Organ
668
liver
635
pancreas
576
connective tissue
430
adipose tissue
296
epithelium
240
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
76
AMP
Genome assembly (visualization)
72
GRCh38
72
hg19
Lab
76
AMP-T2D consortium
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
embryo
limb
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
coronary artery
5
1
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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