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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
7
DNase-seq
3
ChIP-seq
1
Hi-C
Assay category
46
DNA accessibility
41
DNA methylation
3
DNA binding
1
3D chromatin structure
Target of assay
histone
8
histone modification
5
broad histone mark
3
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
4
June, 2019
2
November, 2018
2
October, 2019
2
September, 2017
1
August, 2017
Available data
546
bam
475
bigWig
417
tsv
365
fastq
87
bed narrowPeak
80
zippedFastqFolder
42
bigBed narrowPeak
11
bed bed3+
9
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
tagAlign
3
cool
1
bedpe
1
hdf5
Organism
91
Homo sapiens
Biosample type
80
primary cell
9
tissue
2
cell line
Organ
98
epithelium
91
pancreas
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
23
connective tissue
18
ureter
13
vasculature
11
blood vessel
10
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
embryo
1
spleen
Project
80
HPAP
11
AMP
Genome assembly (visualization)
11
GRCh38
9
hg19
Lab
80
Klaus Kaestner, Upenn
11
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
91 results
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Clear Filters
WGBS
ATAC-seq
DNase-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
body of pancreas
4
islet of Langerhans
3
pancreas
2
cell line
Panc1
1
1
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