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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
DNase-seq
3
ChIP-seq
Assay category
4
DNA accessibility
3
DNA binding
Target of assay
2
histone
2
histone modification
1
broad histone mark
1
control
1
narrow histone mark
Date released
4
June, 2019
3
December, 2017
Available data
47
bed narrowPeak
42
bam
35
bigWig
26
fastq
19
tsv
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
tissue
1
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
23
connective tissue
21
epithelium
19
pancreas
18
ureter
13
liver
13
vasculature
11
blood vessel
4
artery
4
eye
3
embryo
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
7
AMP
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
7
AMP-T2D consortium
Audit category:
1
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
7 results
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DNase-seq
ChIP-seq
in vitro differentiated cells
pancreatic endoderm
3
tissue
retina
3
primary cell
retinal pigment epithelial cell
1
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