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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
28
ChIP-seq
3
Hi-C
Assay category
195
DNA accessibility
28
DNA binding
3
3D chromatin structure
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
187
June, 2019
20
August, 2017
9
October, 2019
6
November, 2017
3
October, 2022
1
November, 2020
Available data
3304
bam
3083
bigWig
1769
bed narrowPeak
1600
tsv
fastq
1027
bigBed narrowPeak
394
tagAlign
320
bed broadPeak
285
bigBed broadPeak
259
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
226
Homo sapiens
Biosample type
193
tissue
32
primary cell
1
cell line
Organ
78
kidney
46
musculature of body
36
brain
36
limb
30
heart
21
epithelium
18
ureter
14
pancreas
13
vasculature
11
blood vessel
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
liver
2
nerve
Project
223
AMP
3
HPAP
Genome assembly (visualization)
203
hg19
200
GRCh38
Lab
223
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
fastq
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
226 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 42 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 20 more…
cell line
Panc1
1
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