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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
106
ChIP-seq
1
ATAC-seq
Assay category
191
DNA accessibility
106
DNA binding
Target of assay
59
histone
59
histone modification
47
transcription factor
33
broad histone mark
26
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
5
October, 2019
2
October, 2017
March, 2019
1
November, 2020
Available data
3007
bam
2803
bigWig
1639
bed narrowPeak
1444
tsv
1032
fastq
951
bigBed narrowPeak
387
tagAlign
297
bed broadPeak
263
bigBed broadPeak
238
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
291
Homo sapiens
Biosample type
210
tissue
59
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
46
musculature of body
45
brain
36
limb
30
heart
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
297
AMP
Genome assembly (visualization)
280
hg19
260
GRCh38
Lab
296
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
March, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
297 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 45 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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