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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
54
ChIP-seq
1
ATAC-seq
Assay category
202
DNA accessibility
54
DNA binding
Target of assay
49
histone
49
histone modification
27
broad histone mark
22
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
41
August, 2017
12
November, 2017
9
October, 2019
6
November, 2018
2
October, 2017
March, 2019
1
November, 2020
Available data
2635
bam
2473
bigWig
1426
tsv
1340
bed narrowPeak
816
fastq
681
bigBed narrowPeak
308
tagAlign
256
bed broadPeak
246
bed bed3+
222
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
20
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
tagAlign bed3+
1
tar
Organism
250
Homo sapiens
Biosample type
207
tissue
47
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
46
musculature of body
45
brain
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
256
AMP
Genome assembly (visualization)
233
hg19
231
GRCh38
Lab
255
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
2
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
March, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
256 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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