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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
4
ATAC-seq
3
WGBS
2
DNase-seq
1
pCHi-C
Assay category
26
DNA binding
6
DNA accessibility
3
DNA methylation
Target of assay
19
control
5
RNA binding protein
5
transcription factor
2
histone
2
histone modification
2
narrow histone mark
Date released
23
October, 2018
7
August, 2017
1
August, 2018
1
February, 2023
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
430
bam
413
bigWig
401
tsv
32
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
36
Homo sapiens
Biosample type
35
tissue
1
in vitro differentiated cells
Organ
525
liver
462
pancreas
310
epithelium
206
brain
191
heart
183
kidney
135
vasculature
130
blood vessel
107
connective tissue
92
limb
74
artery
62
musculature of body
60
blood
60
bodily fluid
36
adipose tissue
33
eye
27
nerve
26
embryo
24
spleen
18
ureter
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
36
AMP
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
36
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
tissue
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
adipose tissue
2
1
3
adipose tissue(adipose white tissue)
1
subcutaneous abdominal adipose tissue
1
in vitro differentiated cells
white fat cell
1
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