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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
401
ChIP-seq
23
ATAC-seq
4
DNase-seq
Assay category
401
DNA binding
27
DNA accessibility
Target of assay
318
transcription factor
81
recombinant protein
80
histone modification
79
histone
54
RNA binding protein
50
narrow histone mark
29
broad histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
239
November, 2017
50
December, 2017
49
November, 2018
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
1
February, 2021
1
June, 2019
Available data
667
bam
609
bigWig
452
fastq
428
bed narrowPeak
345
bigBed narrowPeak
174
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
428
Homo sapiens
Biosample type
296
cell line
113
tissue
14
in vitro differentiated cells
5
primary cell
Organ
429
liver
200
brain
191
heart
183
kidney
181
pancreas
133
vasculature
130
epithelium
129
blood vessel
92
limb
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
428
AMP
Genome assembly (visualization)
424
hg19
361
GRCh38
Lab
394
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
20
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
428 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
295
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
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