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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
Hi-C
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
4
DNA accessibility
1
3D chromatin structure
Date released
89
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
1
March, 2019
1
October, 2022
Available data
3086
bam
2873
bigWig
1600
tsv
1559
bed narrowPeak
1269
fastq
817
bigBed narrowPeak
394
tagAlign
161
txt
153
zippedFastqFolder
133
bed broadPeak
98
bigBed broadPeak
72
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
161
Homo sapiens
Biosample type
158
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
7
pancreas
4
skeleton
1
musculature of body
Project
162
AMP
Genome assembly (visualization)
5
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Audit category:
85
inconsistent ontology term
6
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
162 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
1
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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