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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
7
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
7
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
5
RNA binding protein
5
transcription factor
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
12
July, 2019
5
August, 2017
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
430
bam
413
bigWig
401
tsv
32
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
413
Homo sapiens
Biosample type
411
tissue
2
primary cell
Organ
612
liver
571
pancreas
554
connective tissue
413
adipose tissue
286
epithelium
226
heart
221
brain
156
vasculature
150
blood vessel
135
kidney
91
limb
85
artery
71
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
7
eye
2
pericardium
1
pituitary gland
Project
413
AMP
Genome assembly (visualization)
411
hg19
410
GRCh38
Lab
413
AMP-T2D consortium
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
413 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
2
omental fat pad
4
3
1
1
2
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
subcutaneous abdominal adipose tissue
1
primary cell
mesenchymal stem cell of adipose
1
1
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