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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
8
ChIP-seq
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
8
DNA binding
Target of assay
4
histone
4
histone modification
4
transcription factor
3
broad histone mark
1
narrow histone mark
Date released
134
May, 2022
19
September, 2020
6
November, 2017
2
October, 2019
Available data
3304
bam
3083
bigWig
bed narrowPeak
1600
tsv
1269
fastq
1027
bigBed narrowPeak
394
tagAlign
320
bed broadPeak
285
bigBed broadPeak
259
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
161
Homo sapiens
Biosample type
155
primary cell
6
cell line
Organ
82
epithelium
80
pancreas
6
liver
2
blood vessel
2
vasculature
2
vein
Project
153
HPAP
8
AMP
Genome assembly (visualization)
8
hg19
Lab
153
Klaus Kaestner, Upenn
8
AMP-T2D consortium
Audit category:
2
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed narrowPeak
hdf5
BIOSAMPLE
ASSAY
161 results
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Clear Filters
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
endothelial cell of umbilical vein
2
cell line
HepG2
6
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