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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
340
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
340
DNA binding
6
DNA accessibility
Target of assay
303
transcription factor
81
recombinant protein
53
RNA binding protein
34
histone
34
histone modification
21
broad histone mark
17
chromatin remodeller
13
narrow histone mark
2
other context
2
other post-translational modification
Date released
239
November, 2017
50
December, 2017
49
November, 2018
6
August, 2017
2
June, 2019
Available data
668
bam
610
bigWig
452
fastq
429
bed narrowPeak
346
bigBed narrowPeak
175
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
346
Homo sapiens
Biosample type
281
cell line
49
tissue
14
in vitro differentiated cells
2
primary cell
Organ
346
liver
124
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
0
esophagus
Project
346
AMP
Genome assembly (visualization)
342
hg19
321
GRCh38
Lab
346
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
missing controlled_by
Audit category:
20
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
nerve
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
281
tissue
liver
38
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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