Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
166
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
163
histone
163
histone modification
105
narrow histone mark
58
broad histone mark
6
control
RNA binding protein
3
transcription factor
Date released
76
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
16
July, 2019
4
October, 2017
2
November, 2018
Available data
237
bam
216
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
114
tagAlign
42
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
14
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
216
Homo sapiens
Biosample type
199
tissue
17
primary cell
Organ
561
pancreas
556
liver
543
connective tissue
408
adipose tissue
272
epithelium
216
brain
213
heart
150
vasculature
146
blood vessel
129
kidney
91
limb
84
artery
68
musculature of body
58
bone element
45
blood
45
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
5
eye
1
pericardium
1
pituitary gland
Project
216
AMP
Genome assembly (visualization)
208
GRCh38
153
hg19
Lab
216
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bedgraph
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
216 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
8
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download