Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
Hi-C
2
pCHi-C
Assay category
3
3D chromatin structure
Date released
3
October, 2022
2
March, 2020
Available data
2922
bam
2759
bigWig
1600
tsv
1466
bed narrowPeak
955
fastq
725
bigBed narrowPeak
316
tagAlign
259
bed bed3+
250
bed broadPeak
221
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Organ
3
epithelium
3
pancreas
Project
3
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
2
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2017
BIOSAMPLE
ASSAY
5 results
search-icon
table-tab-icon
Clear Filters
Hi-C
pCHi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
Download