Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
123
DNA binding
89
Transcription
9
DNA accessibility
8
DNA methylation
Target of assay
70
histone modification
69
histone
34
broad histone mark
34
narrow histone mark
29
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
302
November, 2017
229
August, 2017
93
December, 2017
85
November, 2018
76
February, 2023
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
May, 2022
11
September, 2017
9
October, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
248
fastq
243
bam
233
bigWig
141
bed narrowPeak
89
tsv
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
19
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
229
Homo sapiens
Biosample type
146
tissue
49
in vitro differentiated cells
34
primary cell
Organ
139
pancreas
55
connective tissue
29
epithelium
28
liver
6
adipose tissue
2
musculature of body
Project
229
AMP
Genome assembly (visualization)
198
hg19
193
GRCh38
Lab
229
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tagAlign
month_released!
May, 2022
BIOSAMPLE
ASSAY
229 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
12
89
1
1
liver
25
1
1
pancreas
7
adipose tissue
2
3
skeletal muscle tissue
2
+ See 2 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
skeletal muscle myoblast
3
1
1
pancreatic acinar cell
1
See all biosamples
Download