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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
3
WGBS
2
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
25
DNA binding
3
DNA accessibility
3
DNA methylation
Target of assay
19
control
5
RNA binding protein
5
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2018
6
August, 2017
1
August, 2018
1
November, 2018
1
October, 2017
Available data
430
bam
413
bigWig
401
tsv
32
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
32
Homo sapiens
Biosample type
31
tissue
1
in vitro differentiated cells
Organ
452
liver
417
pancreas
236
epithelium
84
connective tissue
60
blood
60
bodily fluid
32
adipose tissue
26
embryo
24
spleen
17
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
32
AMP
Genome assembly (visualization)
11
GRCh38
9
hg19
Lab
32
AMP-T2D consortium
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
lymph node
skin of body
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
adipose tissue
2
3
in vitro differentiated cells
white fat cell
1
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