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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
Assay category
119
DNA binding
Target of assay
66
control
53
histone
53
histone modification
32
broad histone mark
21
narrow histone mark
Date released
47
August, 2017
23
May, 2020
21
November, 2017
9
October, 2019
8
August, 2021
7
October, 2017
3
February, 2021
1
May, 2021
Available data
3304
bam
bigWig
1769
bed narrowPeak
1599
tsv
1269
fastq
1027
bigBed narrowPeak
394
tagAlign
320
bed broadPeak
285
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
118
Homo sapiens
Biosample type
93
tissue
22
in vitro differentiated cells
3
cell line
1
primary cell
Organ
44
liver
35
brain
21
connective tissue
7
adipose tissue
5
pancreas
2
artery
2
blood vessel
2
epithelium
2
heart
2
musculature of body
2
vasculature
Project
119
AMP
Genome assembly (visualization)
1
GRCh38
Lab
119
AMP-T2D consortium
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bed3+
bigWig
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ChIP-seq
tissue
liver
43
cingulate gyrus
8
brain
7
subcutaneous abdominal adipose tissue
7
layer of hippocampus
4
+ See 15 more…
in vitro differentiated cells
adipocyte
14
neural progenitor cell
7
pancreatic PP cell
1
cell line
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
primary cell
hepatocyte
1
See all biosamples
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