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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
total RNA-seq
3
small RNA-seq
2
pCHi-C
Assay category
171
Transcription
Date released
144
May, 2020
9
August, 2021
7
July, 2019
5
December, 2019
5
January, 2019
2
March, 2020
February, 2020
1
October, 2019
Available data
668
bam
609
bigWig
452
fastq
429
bed narrowPeak
346
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
173
Homo sapiens
Biosample type
153
tissue
15
cell line
5
primary cell
Organ
476
connective tissue
416
pancreas
399
adipose tissue
173
liver
165
heart
156
epithelium
65
blood vessel
vasculature
58
bone element
56
artery
24
kidney
14
brain
14
embryo
7
musculature of body
4
eye
4
limb
4
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
173
AMP
Genome assembly (visualization)
162
GRCh38
162
hg19
Lab
164
AMP-T2D consortium
9
Bing Ren, UCSD
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
February, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
173 results
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total RNA-seq
small RNA-seq
pCHi-C
tissue
liver
147
1
1
right lobe of liver
2
2
cell line
HepG2
14
1
primary cell
hepatocyte
5
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