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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
67
Transcription
4
DNA accessibility
Date released
84
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
3008
bam
2803
bigWig
1639
bed narrowPeak
tsv
1033
fastq
951
bigBed narrowPeak
387
tagAlign
298
bed broadPeak
263
bigBed broadPeak
238
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
155
Homo sapiens
Biosample type
152
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
57
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
156
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
tsv
organ_slims!
epithelium
mammary gland
BIOSAMPLE
ASSAY
156 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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