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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
52
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
49
transcription factor
19
RNA binding protein
15
recombinant protein
3
chromatin remodeller
3
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
80
April, 2019
76
October, 2018
70
November, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
25
February, 2020
19
April, 2020
19
October, 2017
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2023
Available data
70
fastq
69
bam
66
bigWig
59
bed narrowPeak
59
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
70
Homo sapiens
Biosample type
43
cell line
26
tissue
1
primary cell
Organ
50
liver
15
blood
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
70
AMP
Genome assembly (visualization)
65
GRCh38
57
hg19
Lab
70
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Anna Gloyn, Oxford
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
70 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
42
1
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic cell
1
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