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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
Target of assay
960
histone modification
histone
483
narrow histone mark
475
broad histone mark
468
transcription factor
339
control
110
RNA binding protein
88
recombinant protein
30
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
13
November, 2017
8
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
2
December, 2018
Available data
35
bam
35
bed narrowPeak
35
bigWig
35
fastq
33
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
26
cell line
5
tissue
3
in vitro differentiated cells
1
primary cell
Organ
19
liver
10
blood
10
bodily fluid
3
spleen
2
connective tissue
1
epithelium
Project
35
AMP
Genome assembly (visualization)
35
GRCh38
35
hg19
Lab
35
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Bing Ren, UCSD
target.investigated_as!
histone
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
cell line
HepG2
16
GM12878
10
tissue
spleen
3
liver
2
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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