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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
67
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
61
transcription factor
21
RNA binding protein
15
recombinant protein
6
control
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
85
fastq
84
bam
78
bigWig
71
bed narrowPeak
71
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
85
Homo sapiens
Biosample type
58
cell line
26
tissue
1
primary cell
Organ
50
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
85
AMP
Genome assembly (visualization)
77
GRCh38
69
hg19
Lab
85
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
KPMP
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
March, 2023
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
42
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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