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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
Assay category
13
DNA binding
Target of assay
103
histone
103
histone modification
56
broad histone mark
53
control
47
narrow histone mark
13
transcription factor
8
RNA binding protein
5
nucleotide modification
Date released
10
October, 2018
1
August, 2017
1
May, 2021
1
November, 2019
Available data
13
bam
13
bed narrowPeak
13
bigWig
11
fastq
10
bigBed narrowPeak
1
bed bed3+
1
tagAlign
Organism
13
Homo sapiens
Biosample type
11
tissue
1
cell line
1
in vitro differentiated cells
Organ
326
liver
51
blood
51
bodily fluid
23
connective tissue
17
heart
13
pancreas
10
kidney
9
epithelium
9
vasculature
8
blood vessel
6
spleen
5
adipose tissue
5
artery
3
brain
3
embryo
1
eye
Project
13
AMP
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Katalin Susztak, Upenn
month_released!
February, 2018
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
tissue
body of pancreas
9
islet of Langerhans
1
pancreas
1
cell line
EndoC_BH1
1
in vitro differentiated cells
pancreatic PP cell
1
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