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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
ChIP-seq
5
ATAC-seq
Assay category
402
DNA binding
5
DNA accessibility
Target of assay
235
transcription factor
87
histone
87
histone modification
77
control
66
recombinant protein
50
broad histone mark
37
narrow histone mark
35
RNA binding protein
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
670
February, 2021
396
November, 2017
372
August, 2017
314
October, 2019
296
May, 2020
218
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
120
May, 2019
108
July, 2019
103
February, 2023
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
49
April, 2018
41
September, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
18
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
393
bam
329
bigWig
325
fastq
308
bed narrowPeak
307
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
2
bed bed3+
Organism
407
Homo sapiens
Biosample type
305
cell line
88
tissue
14
primary cell
Organ
305
liver
91
brain
11
epithelium
11
pancreas
6
vasculature
3
blood vessel
Project
407
AMP
Genome assembly (visualization)
284
GRCh38
278
hg19
Lab
407
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
18
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
407 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
305
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic alpha cell
2
pancreatic beta cell
2
+ See 1 more…
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