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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
110
total RNA-seq
23
ATAC-seq
17
pCHi-C
16
snATAC-seq
Assay category
154
DNA binding
110
Transcription
39
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
45
May, 2020
24
May, 2022
February, 2023
16
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
320
Homo sapiens
Biosample type
239
primary cell
47
in vitro differentiated cells
34
tissue
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
213
T1D
107
AMP
Genome assembly (visualization)
238
hg19
180
GRCh38
Lab
3719
AMP-T2D consortium
320
Kyle Gaulton, UCSD
248
Klaus Kaestner, Upenn
128
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
February, 2023
May, 2023
BIOSAMPLE
ASSAY
320 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
6
18
4
pancreas
1
4
thymus
1
See all biosamples
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