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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
65
ChIP-seq
6
WGBS
5
ATAC-seq
3
pCHi-C
3
small RNA-seq
2
DNase-seq
1
RNA microarray
Assay category
401
Transcription
65
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
36
histone
36
histone modification
24
control
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
45
August, 2017
23
October, 2018
12
July, 2019
5
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
430
bam
413
bigWig
402
tsv
32
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
482
Homo sapiens
Biosample type
480
tissue
2
primary cell
1
in vitro differentiated cells
Organ
836
pancreas
778
liver
653
connective tissue
478
adipose tissue
451
epithelium
357
heart
354
kidney
281
brain
201
vasculature
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
36
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
483
AMP
Genome assembly (visualization)
413
hg19
412
GRCh38
Lab
483
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
February, 2023
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
islet of Langerhans
4
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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