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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
96
ChIP-seq
7
ATAC-seq
6
WGBS
3
DNase-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
406
Transcription
96
DNA binding
10
DNA accessibility
6
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
35
control
20
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
45
August, 2017
43
October, 2019
23
October, 2018
12
July, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
471
bam
443
bigWig
406
tsv
39
bed narrowPeak
35
bigBed narrowPeak
32
fastq
8
tagAlign
4
bed broadPeak
3
bed bed3+
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
520
Homo sapiens
Biosample type
518
tissue
2
primary cell
1
in vitro differentiated cells
Organ
888
pancreas
776
liver
649
connective tissue
483
epithelium
478
adipose tissue
358
heart
273
kidney
252
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
36
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
521
AMP
Genome assembly (visualization)
444
hg19
442
GRCh38
Lab
521
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
521 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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