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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
211
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
183
histone
183
histone modification
116
narrow histone mark
67
broad histone mark
31
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
12
October, 2017
March, 2020
2
November, 2018
1
February, 2023
Available data
237
bam
216
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
114
tagAlign
42
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
24
tsv
14
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
277
Homo sapiens
Biosample type
259
tissue
18
primary cell
Organ
870
pancreas
719
liver
655
connective tissue
489
epithelium
473
adipose tissue
375
heart
349
kidney
277
brain
227
vasculature
222
blood vessel
159
bone element
140
artery
122
limb
91
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
36
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
277
AMP
Genome assembly (visualization)
211
GRCh38
158
hg19
Lab
277
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
March, 2020
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
277 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
16
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 76 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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