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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
288
total RNA-seq
104
ChIP-seq
63
ATAC-seq
14
single cell RNA-seq
11
snATAC-seq
10
DNase-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
304
Transcription
104
DNA binding
86
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Target of assay
70
histone
70
histone modification
41
broad histone mark
35
control
29
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
137
August, 2017
126
July, 2018
60
October, 2019
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
April, 2018
8
January, 2021
7
November, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
August, 2021
2
February, 2020
2
May, 2019
1
August, 2022
Available data
432
bam
370
bigWig
288
tsv
175
fastq
116
bed narrowPeak
55
bigBed narrowPeak
23
bed broadPeak
21
bed bed3+
16
tagAlign
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
503
Homo sapiens
Biosample type
487
tissue
15
cell line
8
primary cell
Organ
839
pancreas
778
liver
644
connective tissue
epithelium
456
adipose tissue
393
heart
354
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
480
AMP
30
T1D
Genome assembly (visualization)
410
hg19
383
GRCh38
Lab
447
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
October, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
510 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
278
40
58
6
7
1
3
4
1
1
tibial nerve
5
35
1
2
pancreas
2
14
4
2
1
2
1
1
1
body of pancreas
3
2
4
4
2
2
cell line
Panc1
13
1
1
primary cell
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
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