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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
53
single cell RNA-seq
20
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
2
FAIRE-seq
Assay category
141
Transcription
27
DNA methylation
22
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
174
bigWig
171
bam
140
tsv
85
fastq
23
bed bedMethyl
23
bigBed bedMethyl
21
bed narrowPeak
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
198
Homo sapiens
Biosample type
115
primary cell
83
tissue
Organ
86
epithelium
85
pancreas
25
heart
20
connective tissue
18
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
198
AMP
Genome assembly (visualization)
180
hg19
168
GRCh38
Lab
198
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
February, 2018
BIOSAMPLE
ASSAY
198 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
FAIRE-seq
primary cell
pancreatic beta cell
10
3
4
pancreatic alpha cell
10
3
3
pancreatic ductal cell
4
6
4
pancreatic acinar cell
2
6
3
pancreatic delta cell
7
+ See 30 more…
tissue
heart left ventricle
2
2
1
4
islet of Langerhans
6
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
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