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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
69
ChIP-seq
6
RRBS
5
DNase-seq
4
ATAC-seq
3
WGBS
1
FAIRE-seq
Assay category
89
Transcription
69
DNA binding
10
DNA accessibility
9
DNA methylation
Target of assay
151
histone modification
histone
84
broad histone mark
65
narrow histone mark
44
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
329
February, 2021
314
May, 2020
298
August, 2021
291
November, 2017
259
May, 2021
203
February, 2023
200
May, 2022
177
August, 2017
168
July, 2018
168
June, 2019
108
October, 2019
82
November, 2018
78
July, 2019
63
December, 2017
59
September, 2020
58
March, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
25
May, 2019
23
February, 2018
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
February, 2020
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
6
October, 2017
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
157
fastq
153
bam
124
bigWig
89
tsv
34
bed narrowPeak
11
bed bed3+
11
bigBed narrowPeak
10
tagAlign
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
4
bigBed broadPeak
Organism
176
Homo sapiens
Biosample type
130
tissue
26
in vitro differentiated cells
21
primary cell
Organ
116
pancreas
39
connective tissue
22
liver
15
epithelium
adipose tissue
7
musculature of body
Project
177
AMP
Genome assembly (visualization)
130
hg19
121
GRCh38
Lab
177
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
adipose tissue
brain
target.investigated_as!
histone
BIOSAMPLE
ASSAY
177 results
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Clear Filters
total RNA-seq
ChIP-seq
RRBS
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
89
8
1
1
liver
16
1
3
skeletal muscle tissue
3
4
pancreas
2
right lobe of liver
1
1
in vitro differentiated cells
adipocyte
25
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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