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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
89
total RNA-seq
9
WGBS
5
ATAC-seq
5
DNase-seq
2
RRBS
1
FAIRE-seq
Assay category
235
DNA binding
89
Transcription
11
DNA accessibility
11
DNA methylation
Target of assay
164
histone modification
163
histone
92
broad histone mark
70
narrow histone mark
47
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
649
February, 2021
397
May, 2021
393
November, 2017
346
August, 2017
341
May, 2020
305
August, 2021
267
October, 2019
198
May, 2022
170
February, 2023
170
June, 2019
168
July, 2018
87
July, 2019
85
November, 2018
81
December, 2017
80
April, 2019
76
October, 2018
63
May, 2019
61
November, 2019
59
September, 2020
55
March, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
35
December, 2018
30
January, 2019
26
February, 2018
20
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
6
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
246
fastq
243
bam
220
bigWig
128
bed narrowPeak
89
tsv
70
tagAlign
42
bigBed narrowPeak
28
bed broadPeak
19
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
339
Homo sapiens
Biosample type
236
tissue
63
in vitro differentiated cells
47
primary cell
Organ
166
pancreas
108
connective tissue
54
liver
45
adipose tissue
29
epithelium
musculature of body
Project
346
AMP
Genome assembly (visualization)
222
hg19
210
GRCh38
Lab
346
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
blood vessel
embryo
musculature of body
BIOSAMPLE
ASSAY
346 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
32
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
pancreas
14
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
62
1
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
See all biosamples
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