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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
8
ATAC-seq
1
Hi-C
1
snATAC-seq
Assay category
37
DNA binding
9
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
8
histone
histone modification
7
broad histone mark
7
control
2
RNA binding protein
2
chromatin remodeller
1
narrow histone mark
Date released
715
February, 2021
314
May, 2020
309
November, 2017
299
August, 2021
259
May, 2021
205
February, 2023
200
May, 2022
199
June, 2019
189
August, 2017
168
July, 2018
118
October, 2019
108
July, 2019
85
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
45
fastq
43
bam
38
bigWig
36
bed narrowPeak
30
bigBed narrowPeak
2
tagAlign
1
bed broadPeak
Organism
47
Homo sapiens
Biosample type
28
cell line
19
tissue
Organ
27
blood
27
bodily fluid
8
spleen
6
pancreas
4
brain
1
adipose tissue
1
connective tissue
1
liver
Project
47
AMP
Genome assembly (visualization)
38
GRCh38
37
hg19
Lab
46
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
audit script error
1
inconsistent control
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
47 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
snATAC-seq
cell line
GM12878
27
HepG2
1
tissue
spleen
7
1
body of pancreas
4
brain
3
islet of Langerhans
1
1
cerebellum (Hemisphere)
1
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