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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
8
DNase-seq
5
GRO-seq
5
WGBS
3
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
61
DNA binding
12
DNA accessibility
5
DNA methylation
1
Transcription
Target of assay
58
transcription factor
21
RNA binding protein
15
recombinant protein
5
chromatin remodeller
3
control
Date released
565
February, 2021
398
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
200
May, 2022
197
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
80
April, 2019
76
November, 2018
76
October, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
19
April, 2020
18
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
81
fastq
80
bigWig
75
bam
67
bed narrowPeak
67
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
csv
Organism
84
Homo sapiens
Biosample type
59
cell line
19
tissue
4
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
50
liver
16
blood
16
bodily fluid
spleen
7
pancreas
2
adipose tissue
2
brain
2
connective tissue
1
embryo
1
musculature of body
Project
84
AMP
Genome assembly (visualization)
71
GRCh38
68
hg19
5
hg18
Lab
84
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
bone element
spleen
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
DNase-seq
GRO-seq
WGBS
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
42
1
GM12878
15
1
tissue
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
primary cell
pancreatic cell
1
stem cell
hESC
1
See all biosamples
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