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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
5
total RNA-seq
4
ATAC-seq
1
Hi-C
Assay category
19
DNA binding
5
Transcription
4
DNA accessibility
1
3D chromatin structure
Target of assay
14
transcription factor
7
histone
7
histone modification
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
715
February, 2021
394
May, 2021
365
August, 2017
361
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
89
December, 2017
76
April, 2019
65
October, 2018
64
November, 2018
63
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
25
bam
25
fastq
20
bigWig
15
bed narrowPeak
15
bigBed narrowPeak
5
tsv
1
bed broadPeak
1
bedpe
1
hic
Organism
29
Homo sapiens
Biosample type
17
cell line
12
tissue
Organ
12
blood
12
bodily fluid
7
spleen
5
liver
5
pancreas
Project
29
AMP
Genome assembly (visualization)
23
hg19
22
GRCh38
Lab
24
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
adrenal gland
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
cell line
GM12878
12
HepG2
5
tissue
spleen
7
islet of Langerhans
4
1
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